WebGeneMark

GeneMark Version 2.5 (Reload this page)

Reference:	Borodovsky M. and McIninch J. GeneMark: parallel gene recognition for both DNA strands, Computers & Chemistry, 1993, Vol. 17, No. 19, pp. 123-133. [ Download PDF ]


UPDATE (November 8, 2005): Prediction models ready for a total of 265 completely sequenced prokaryotic genomes in NCBI RefSeq database Pre-calculated prediction database for these genomes

Input Sequence
Title (optional): Sequence: Sequence File upload:
Running Options
Species: RBS model: Use alternate genetic code: Eukaryote (e.g. Yeast, ATG = only start) Mycoplasma (TGA = Tryptophan)	Window size:bp Step size:bp Threshold:%
Output Options
Graphical output options Generate PDF graphics (screen) Generate PostScript graphics (email) Mark orfs on graph Mark regions on graph Mark stop codons on graph Mark start codons on graph Mark frameshifts on graph Mark putative exon splice sites Print graph in landscape format Email address (required for PostScript email output)	Text output options List open reading frames (ORFs) predicted as coding sequences (CDSs) List regions of interest List putative eukaryotic splice sites Write protein translations of ORFs Write nucleotide transcripts of ORFs Write protein translations of regions Write nucleotide transcripts of regions Write protein translations of putative exons Write nucleotide transcripts of putative exons
Run

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